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Ep209: Mathai Mammen on Developing Drugs Against Undruggable Targets

The Long Run with Luke Timmerman1h 36m

Mattai Mammen, CEO of Parabolus Medicines, discusses his journey from Harvard MD-PhD student studying multivalency under George Whitesides to founding TheraVance, leading R&D at Merck and J&J, and now building a platform company using alpha-helical peptides to drug previously undruggable intracellular protein targets like beta-catenin. His personal tragedies—losing two daughters at age six—profoundly shaped his commitment to developing transformative medicines.

Summary

Mattai Mammen traces his path from being born in India and raised in Halifax, Nova Scotia, where his parents worked in biomedical fields, through his chemistry and physics studies at Dalhousie University. He pursued an MD-PhD at Harvard in George Whitesides' lab, focusing on multivalency in molecular interactions—how repeated binding elements in nature could be harnessed therapeutically. After cold-sending his business plan to Roy Vagelos, Mammen co-founded TheraVance in 1997 based on multivalency principles, where he spent 14 years building a platform that ultimately produced five FDA-approved medicines and trained numerous future biotech CEOs.

Mammen's trajectory then took him to Merck, where he led research in oncology and other therapeutic areas, building organizational capabilities and recruiting exceptional talent. He moved to J&J as head of R&D, overseeing 14,000 people and driving a portfolio transformation that included novel approaches like CAR-T cell therapy, nasal spray ketamine (Spravato), and targeted radioligand therapies. During this period—between 2010 and 2014—Mammen lost two daughters, Mia and Laney, both at age six. Rather than abandoning his career, he deepened his commitment to developing impactful medicines, viewing his work as a way to honor their memory and reduce suffering for other families.

Mammen joined Parabolus (formerly Fog Pharma) as CEO to build a company around Greg Verdine's alpha-helical peptide platform. The core innovation addresses a fundamental limitation in drug discovery: approximately 80% of intracellular proteins lack the drug-binding pockets that small molecules and traditional biologics require. Parabolus's technology uses stabilized alpha-helical peptides incorporating thousands of unnatural amino acids (versus the 20 naturally occurring ones) to bind flat protein surfaces. The lead program, Zolocatetide, targets the beta-catenin-TCF complex, which had eluded all previous drug discovery efforts despite decades of attempts by major pharma companies.

In clinical trials, Zolocatetide demonstrated a 74% objective response rate in desmoid tumors—aggressive soft tissue cancers causing chronic pain and dysfunction—with manageable safety profiles. The company strategically pivoted from colorectal cancer, where patients carried multiple mutations, to indication-specific approaches starting with genetically pure diseases driven primarily by beta-catenin alterations. Parabolus conducted the largest venture-backed biotech IPO in 2026, raising $770 million to expand Zolocatetide into multiple indications (FAP, adenomatous cranial pharyngeoma, hepatocellular carcinoma) and pursue additional undruggable targets in oncology and beyond through a Regeneron collaboration.

Mammen emphasizes that his hiring and organizational philosophy—prioritizing intellectual curiosity, genuine hunger to achieve, and mission-driven motivation—proved critical across all his roles. He advocates for choiceful project selection, only pursuing medicines addressing truly unmet needs rather than incremental improvements. The company leverages AI and machine learning both in peptide discovery (using reinforcement learning on proprietary datasets of helical peptides) and in clinical development (analyzing patient biopsies, PDX models, and genetic signatures to identify responsive populations and optimize trial design).

About this episode

Mathai Mammen, CEO of Cambridge, Mass.-based Parabilis Medicine, on developing alpha helical peptide molecules against hard targets of disease.

Key Insights

  • Approximately 80% of intracellular proteins lack drug-binding pockets, making them inaccessible to conventional small molecules and biologics, representing a vast untapped therapeutic frontier.
  • Mammen's PhD thesis on controlling entropy and electrostatics in multivalent molecular interactions directly became the intellectual foundation for TheraVance's multivalent drug platform.
  • Roy Vagelos, a retired Merck executive, became a co-founder of TheraVance after Mammen cold-mailed him a business plan—a pivotal moment that Mammen acknowledges was essential for the company's success.
  • Mammen intentionally hired experienced people above and around him at TheraVance to avoid the founder arrogance that often kills promising companies, despite starting the company himself.
  • TheraVance's first 200 employees included 16 individuals who became CEOs of biotech companies, indicating the caliber of talent Mammen attracted and trained.
  • Mammen adopted a mission-based project selection filter at J&J: if a project disappeared overnight, would anyone care and would patients go unserved—only truly differentiated programs survived this test.
  • The loss of his two daughters at age six in 2010 and 2014 prompted Mammen to double down on medicine development rather than leave the field, viewing the work as creating ripple effects of impact across entire families and communities.
  • Parabolus's alpha-helical peptide platform achieves its diversity through hundreds of different stabilizing linkages and thousands of synthetic amino acids (versus one staple and 20 natural amino acids in prior stapled peptide technology).
  • Zolocatetide demonstrated safety and tolerability in colorectal cancer despite hitting a smooth protein target, but the company strategically shifted to genetically pure indications where beta-catenin drives disease more uniformly.
  • Parabolus uses proprietary AI models trained through reinforcement learning on decade-long datasets of helical peptide performance, creating a defensible competitive moat that general AI drug discovery platforms cannot replicate.
  • The 74% objective response rate in desmoid tumors represents dramatic clinical benefit in a disease where patients previously had no approved medicines and suffered decades of uncontrollable pain.
  • Mammen believes that curious people tend to be humble because continuous learning reveals how much previous knowledge was incorrect, creating a positive correlation between intellectual curiosity and lack of arrogance.

Topics

Alpha-helical peptide drug discovery platformUndruggable protein targets and intracellular drug deliveryBeta-catenin-TCF complex as cancer targetDesmoid tumors and rare cancer indicationsOrganizational culture and talent recruitmentAI and machine learning in drug discovery and developmentPersonal tragedy and mission-driven motivationTransition from biotech founder to pharma executive to startup CEOMultivalency in molecular biologyDrug development risk management and indication selection

Transcript

Welcome to the long run. This is a podcast for biotech adventurers. I'm your host, Luke Timmerman. Today's guest is Mattai Mammon. Mattai is the CEO of Cambridge, Massachusetts-based Parabolus Medicines. The company has a platform for making drugs that hit elusive biological targets that are known drivers of disease. Parabilis attacks these targets with alpha helical peptide drugs that can get inside cells and bind with relatively flat and smooth surfaces of proteins. It pursues these targets which conventional small molecules and biologics haven't been able to hit. The initial application of this technology is for a drug candidate against the beta-catenin and TCF complex. This first-of-its-kind drug candidate, Zolocatetide, is being evaluated in clinical trials for Desmoid tumors…

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