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Ep208: Gary Nabel on Developing a Vaccine for Epstein-Barr Virus

The Long Run with Luke Timmerman1h 7m

Gary Nabel, CEO of Modex Therapeutics, discusses his career trajectory from virology to leading vaccine development at the NIH Vaccine Research Center and Sanofi, culminating in founding a biotech company developing a multi-specific bispecific vaccine against Epstein-Barr virus in collaboration with Merck. He explains how advances in structural biology, antibody engineering, and rational vaccine design have enabled the development of next-generation vaccines and immunotherapies targeting infectious diseases and cancers.

Summary

Gary Nabel traces his scientific journey from his undergraduate years at Harvard Medical School through his MD-PhD training, influenced by his government advisor who suggested he pursue science to ultimately work in policy. His early career was shaped by mentorship from David Baltimore at Caltech, where he studied the intersection of viral biology and immunology, publishing foundational work on HIV activation in T cells via the NF-kappaB transcription factor in 1987.

Nabel's early career spanned academic medicine at the University of Michigan, where he balanced clinical practice with laboratory research, then transitioned to the NIH where he founded and directed the Vaccine Research Center (established by President Clinton in 1998). At the VRC, he led development of rational vaccine design approaches for HIV and other pathogens including Ebola, avian flu, and SARS-CoV-2. Key technological advances enabling this work included structural biology methods that revealed viral glycoprotein structures at atomic resolution, improved B cell antibody identification techniques, and advances in DNA and mRNA vaccine platforms.

Nabel moved to Sanofi as Chief Scientific Officer in 2012, where he oversaw R&D portfolios and established the Breakthrough Laboratories—a skunkworks division pursuing novel approaches to antibody engineering. There, he and colleague Elias Zerhouni developed multi-specific antibodies that could simultaneously target multiple antigens, addressing the challenge that single-target approaches fail against viruses that readily mutate to escape immune responses. The team also expanded earlier work on Epstein-Barr virus vaccines using nanoparticle scaffolds to present multiple viral antigens.

Nabel explains that the GSK EBV vaccine trial (GP350-based) showed 80-90% reduction in infectious mononucleosis but failed to completely prevent viral replication in some subjects. Through subsequent research, Nabel's team identified that the virus uses two distinct cell entry pathways—B cells via GP350 and epithelial cells via a GH-GL-GP42 trimer complex—requiring a bivalent vaccine targeting both pathways. This led to founding Modex Therapeutics in 2020 to develop and advance this technology.

Modex partnered with Merck, leveraging Merck's HPV vaccine experience and manufacturing capabilities while Modex contributed scientific innovation and speed. The EBV vaccine candidate (bivalent) is now in phase one trials with approximately 200 enrolled subjects. Preclinical studies in mice and non-human primates demonstrated high-titer neutralizing antibodies and sterilizing immunity in humanized mouse models. Beyond the EBV vaccine, Modex has five phase one programs including a tetravalent anti-SARS antibody, three tetravalent cancer immunotherapy candidates targeting tumor cells and T cells simultaneously, and an immune rejuvenator targeting T cell activation pathways.

About this episode

Gary Nabel, CEO of Weston, Mass.-based ModeX Therapeutics, on developing a vaccine for Epstein-Barr Virus.

Key Insights

  • Nabel argues that his government advisor's suggestion to pursue science rather than policy proved correct because science provided tools that could ultimately influence policy and benefit people at scale.
  • Nabel claims that David Baltimore's mentorship was more pivotal to his career than even Watson and Crick, demonstrating how individual mentorship often outweighs famous scientific paradigms in shaping career trajectories.
  • Nabel states that HIV's constant mutation and shifting viral proteins required abandoning traditional vaccine approaches (whole-killed or live-attenuated) in favor of rational vaccine design based on understanding viral vulnerabilities.
  • Nabel explains that advances in structural biology enabling atomic-level visualization of viral glycoproteins were essential to identifying critical vulnerabilities on viral surfaces for vaccine targeting.
  • Nabel argues that EBV's use of two distinct cell entry pathways (B cells via GP350 and epithelial cells via GH-GL-GP42) explained why the GSK single-antigen vaccine showed incomplete efficacy despite 80-90% prevention of infectious mono.
  • Nabel claims that multi-specific antibodies addressing viral escape represent a fundamental paradigm shift from reductionist single-target approaches, paralleling the success of antiretroviral cocktail therapy for HIV.
  • Nabel asserts that large pharmaceutical companies, while excellent at scaling and manufacturing, struggle to support creative high-risk early-stage products, creating a niche for biotech innovation.
  • Nabel states that EBV is implicated in approximately 200,000 cases of cancer annually plus associations with multiple sclerosis and other autoimmune diseases, representing a significant public health burden beyond infectious mononucleosis.
  • Nabel explains that the Breakthrough Laboratories at Sanofi succeeded precisely because it operated with small-scale resources and creative freedom while maintaining access to large pharma's infrastructure and expertise.
  • Nabel claims that Merck's prior experience developing the HPV cancer vaccine eliminated the need to convince them of vaccines' cancer-prevention potential, enabling rapid partnership alignment.
  • Nabel states that preclinical sterilizing immunity demonstrated in humanized mouse models represents the furthest achievable proof-of-concept before human clinical trials.
  • Nabel argues that modern vaccine development can use viral markers, genetic markers, and immune markers as surrogate endpoints to assess long-term disease prevention without waiting decades for cancer or autoimmune disease outcomes.

Topics

Vaccine development and rational vaccine designEpstein-Barr virus biology and disease associationsMulti-specific antibody engineeringHIV vaccine research at the NIH Vaccine Research CenterStructural biology and antibody discovery technologiesModex Therapeutics company founding and pipelineCancer immunotherapy using engineered antibodiesCollaboration between biotech and large pharmaClinical trial design for vaccine efficacyViral escape mechanisms and multi-target approaches

Transcript

Welcome to the Long Run. This is a podcast for biotech adventurers. I'm your host, Luke Timmerman. Today's guest is Gary Nabel. Gary is the CEO of Weston, Massachusetts-based Modex Therapeutics. The company has a platform for making multi-specific biologics into vaccines and cancer therapies. MODEX was founded in 2020, building on work that began at Sanofi when Nabel was the chief scientific officer at that large pharmaceutical company. The initial application of this multi-specific biologic technology, currently in clinical trials, is for a vaccine against Epstein-Barr virus. This virus is known to cause infectious mononucleosis, a disease that comes with painful flu-like symptoms that can last weeks or months. But what has become even clearer in recent years is…

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